UU
Homepage of Uwe Menzel


Links

BMC Bioinformatics

Bioinformatics/NGS 

Illumina 

RNA-Seq Blog  

454 Life Sciences

R website

R Journal    

CRAN 

Mathworks 

Planet Math   

NCBI  

EMBL-EBI   

HUGO 

UCSC Genome  

BioPerl  

Mathematical Dept.



UM

Uwe Menzel, PhD.
Department of Mathematics, Uppsala University

Email: uwe.menzel@math.uu.se  


Research

I've got a PhD in Theoretical Physics but have been working in Statistics and Bioinformatics since 1997. The interesting thing with Bioinformatics is that it requires knowledge in several fields: Mathematics/Statistics, Programming as well as Molecular Biology/Biotechnology.


Personal information

Recent teaching
  • Current Course (in Swedish, link)  
  • Probability and Statistics (in Swedish, link)  
  • Statistics for Biologists (in Swedish, link)

Publicly available software
  • Significance tests for Canonical Correlation analysis (in R), Manual (PDF), link to CRAN
  • Exact Multinomial Test (in R), Manual (PDF), link to CRAN
  • Sequence Allocator: PCR primers in non-redandunt regions of the Human Genome (Short description: PDF)

Some talks given at different occasions
  • Describing DNA sequences using Markov chains (PDF)
  • Exact Statistical Methods with small samples (in German, PDF)
  • Data Mining for Illumina BeadChip Arrays (PDF)
  • Discovering the buildup of the Human Genome (PDF)
  • About the prediction of RNA Secondary structure (in German, PDF)
  • EM-algorithm and Hidden Markov Models for  DNA Copy Number  calculation (PDF)
  • Next Generation Sequencing, Conference Report Bielefeld 2007 (PDF)
  • Introduction to Maximum-Likelihood Estimation (in German, PDF)
  • An Application of Markov Chains in Bioinformatics (in German, PDF)
  • Introduction to the Theory of Algorithms (in German, PDF)
  • Introduction to Ordinary Differential Equations (in German, PDF)

Last update: 14. 04. 2010