Links
BMC
Bioinformatics
Bioinformatics/NGS
Illumina
RNA-Seq
Blog
454
Life Sciences
R website
R
Journal
CRAN
Mathworks
Planet Math
NCBI
EMBL-EBI
HUGO
UCSC Genome
BioPerl
Mathematical
Dept.
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Uwe Menzel, PhD.
Department of Mathematics, Uppsala University
Email: uwe.menzel@math.uu.se
Research
I've got a PhD in Theoretical Physics but have been working in
Statistics and Bioinformatics
since 1997. The interesting thing with Bioinformatics is that it
requires knowledge in several fields: Mathematics/Statistics,
Programming as well as Molecular Biology/Biotechnology.
Personal
information
Recent teaching
-
Current Course (in Swedish, link)
-
Probability and Statistics (in Swedish, link)
-
Statistics for Biologists (in Swedish, link)
Publicly
available software
-
Significance tests for Canonical
Correlation analysis (in R),
Manual ( PDF), link to CRAN
-
Exact Multinomial Test (in R), Manual ( PDF),
link to CRAN
-
Sequence Allocator: PCR primers in
non-redandunt regions of the Human Genome (Short description: PDF)
Some talks given
at different occasions
- Describing DNA sequences using Markov chains (PDF)
- Exact Statistical Methods with small
samples (in German, PDF)
- Data Mining for Illumina BeadChip Arrays (PDF)
- Discovering the buildup of the
Human Genome (PDF)
- About the prediction of RNA Secondary
structure (in German, PDF)
- EM-algorithm and Hidden Markov Models
for DNA Copy Number calculation (PDF)
- Next Generation Sequencing, Conference
Report Bielefeld 2007 (PDF)
- Introduction to Maximum-Likelihood
Estimation (in German, PDF)
- An Application of Markov Chains in
Bioinformatics (in German, PDF)
- Introduction to the Theory of Algorithms
(in German, PDF)
- Introduction to Ordinary Differential
Equations (in German, PDF)
Last update: 14. 04. 2010
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